SEQUENCE LISTING

<110>  COUNCIL OF SCIENTIFIC AND INDUSTRIAL RESEARCH
 
<120>  A NOVEL METHOD FOR SIMULTANEOUS DETECTION AND DISCRIMINATION OF 
       BACTERIAL, FUNGAL, PARASITIC AND VIRAL INFECTIONS OF EYE AND 
       CENTRAL NERVOUS SYSTEM

<130>  LLS073 (210NF2006)

<160>  88    

<170>  PatentIn version 3.5

<210>  1
<211>  20
<212>  DNA
<213>  Herpes simplex virus

<400>  1
cgcttggttt cggatgggag                                                   20


<210>  2
<211>  22
<212>  DNA
<213>  Herpes simplex virus 

<400>  2
gcccccagag acttgttgta gg                                                22


<210>  3
<211>  21
<212>  DNA
<213>  Herpes simplex virus 

<400>  3
ggcaatcgtg tacgtcgtcc g                                                 21


<210>  4
<211>  19
<212>  DNA
<213>  Herpes simplex virus 

<400>  4
cgggggggtc ttgcgttac                                                    19


<210>  5
<211>  23
<212>  DNA
<213>  Herpes simplex virus 

<400>  5
caagctgacg gacatttaca agg                                               23


<210>  6
<211>  19
<212>  DNA
<213>  Herpes simplex virus 

<400>  6
gtcccacacg cgaaacacg                                                    19


<210>  7
<211>  21
<212>  DNA
<213>  Cytomegalovirus 

<400>  7
ttccggctca tggcgttaac c                                                 21


<210>  8
<211>  21
<212>  DNA
<213>  Cytomegalovirus

<400>  8
cgccctgctt ttacgttacg c                                                 21


<210> 9
<211> 20
<212> DNA
<213> Cytomegalovirus Morphological transformation gene

<400>  9
cggcgacgac gacgataaag                                                   20


<210>  10
<211>  23
<212>  DNA
<213>  Cytomegalovirus 

<400>  10
caatctggtc gcgtaatcct ctg                                               23


<210>  11
<211>  19
<212>  DNA
<213>  Cytomegalovirus 

<400>  11
gggcacgtcc tcgcagaag                                                    19


<210>  12
<211>  23
<212>  DNA
<213>  Cytomegalovirus 

<400>  12
ccaagatgca ggtgataggt gac                                               23


<210>  13
<211>  23
<212>  DNA
<213>  Varicella zoster ORF 29

<400>  13
ggtcttgccg gagctggtat tac                                               23


<210>  14
<211>  23
<212>  DNA
<213>  Varicella zoster ORF 29

<400>  14
tgcctccgtg aaagacaaag aca                                               23


<210>  15
<211>  26
<212>  DNA
<213>  Varicella zoster

<400>  15
tccatttaac gttgcatcat tttgtg                                            26


<210>  16
<211>  23
<212>  DNA
<213>  Varicella zoster

<400>  16
acgttccggt agcgagttat ctg                                               23


<210>  17
<211>  20
<212>  DNA
<213>  Adenoviruses 

<400>  17
cgccgccaac atgctctacc                                                   20


<210>  18
<211>  20
<212>  DNA
<213>  Adenoviruses Hexon Gene

<400>  18
gttgcgggag gggatggata                                                   20


<210>  19
<211>  24
<212>  DNA
<213>  Eubacterial 16s ribosomal RNA gene region I

<400>  19
tgggctacac acgtgctaca atgg                                              24


<210>  20
<211>  24
<212>  DNA
<213>  Eubacterial 16s ribosomal RNA gene region I

<400>  20
cggactacga tcggttttgt gaga                                              24


<210>  21
<211>  23
<212>  DNA
<213>  Eubacterial 16s ribosomal RNA gene region II

<400>  21
ggcctaacac atgcaagtcg agc                                               23


<210>  22
<211>  25
<212>  DNA
<213>  Eubacterial 16s ribosomal RNA gene region II

<400>  22
ggcagattcc taggcattac tcacc                                             25


<210>  23
<211>  25
<212>  DNA
<213>  Gram +ve bacterial specific portion of 16s ribosomal RNA gene

<400>  23
acgtcaaatc atcatgcccc cttat                                             25


<210>  24
<211>  22
<212>  DNA
<213>  Gram +ve bacterial specific portion of 16s ribosomal RNA gene

<400>  24
tgcagccctt tgtaccgtcc at                                                22


<210>  25
<211>  20
<212>  DNA
<213>  Mycobacterium tuberculosis 

<400>  25
gcggaacgtg ggaccaatac                                                   20


<210>  26
<211>  22
<212>  DNA
<213>  Mycobacterium tuberculosis 

<400>  26
cgacggggtg attttcttct tc                                                22


<210>  27
<211>  29
<212>  DNA
<213>  Mycobacterium fortuitum 

<400>  27
aacttttttg actgccagac acactattg                                         29


<210>  28
<211>  19
<212>  DNA
<213>  Mycobacterium fortuitum 

<400>  28
ggatgccacc ccccaaaag                                                    19                                         


<210>  29
<211>  24
<212>  DNA
<213>  Mycobacterium chelonae

<400>  29
tggttactcg cttggtgaat atgt                                              24


<210>  30
<211>  23
<212>  DNA
<213>  Mycobacterium chelonae

<400>  30
gacgttttgc cgactaccta tcc                                               23


<210>  31
<211>  21
<212>  DNA
<213>  Toxoplasma gondii

<400>  31
cccctctgct ggcgaaaagt g                                                 21


<210>  32
<211>  22
<212>  DNA
<213>  Toxoplasma gondii

<400>  32
ggcgaccaat ctgcgaatac ac                                                22


<210>  33
<211>  24
<212>  DNA
<213>  Chlamydia trachomatis

<400>  33
aatcgtatct cgggttaatg ttgc                                              24


<210>  34
<211>  23
<212>  DNA
<213>  Chlamydia trachomatis

<400>  34
tcgaggaaaa ccgtatgaga aac                                               23


<210>  35
<211>  21
<212>  DNA
<213>  28s ribosomal RNA gene

<400>  35
gctgggactg aggactgcga c                                                 21


<210>  36
<211>  22
<212>  DNA
<213>  28s ribosomal RNA gene

<400>  36
ttcaagacgg gcggcatata ac                                                22


<210>  37
<211>  20
<212>  DNA
<213>  Propionibacterium acnes

<400>  37
tggcgaacgg gtgagtaaca                                                   20


<210>  38
<211>  21
<212>  DNA
<213>  Propionibacterium acnes

<400>  38
ccggtattag ccccagtttc c                                                 21


<210>  39
<211>  19
<212>  DNA
<213>  Gram -ve bacterial specific portion of gyr B gene

<400>  39
cggcggcaag ttcgacgac                                                    19


<210>  40
<211>  19
<212>  DNA
<213>  Gram -ve bacterial specific portion of gyr B gene

<400>  40
ccaccgagac gcccacacc                                                    19


<210>  41
<211>  18
<212>  DNA
<213>  Gram -ve bacterial aconitate hydratase gene

<400>  41
ccaggtcggc ggagaagc                                                     18


<210>  42
<211>  17
<212>  DNA
<213>  Gram -ve bacterial aconitate hydratase gene

<400>  42
ccaccggccc gatgacc                                                      17


<210>  43
<211>  18
<212>  DNA
<213>  Gram - ve ribonuclease 1 gene

<400>  43
gccgccctga ccaccttc                                                     18


<210>  44
<211>  19
<212>  DNA
<213>  Gram - ve ribonuclease 1 gene

<400>  44
gcgggttgtt cggcatcag                                                    19


<210>  45
<211>  87
<212>  DNA
<213>  Herpes simplex virus

<400>  45
cgcttggttt cggatgggag gcaactgtgc tatccccatc acggtcatgg agtacaccga       60

atgctcctac aacaagtctc tgggggc                                           87


<210>  46
<211>  70
<212>  DNA
<213>  Herpes simplex virus

<400>  46
ggcaatcgtg tacgtcgtcc gcacatcaca gtcgcggcag cgtcatcggc ggtaacgcaa       60

gacccccccg                                                              70


<210>  47
<211>  79
<212>  DNA
<213>  Herpes simplex virus

<400>  47
caagctgacg gacatttaca aggtccccct ggacgggtac ggccgcatga acggccgggg       60

cgtgtttcgc gtgtgggac                                                    79


<210>  48
<211>  72
<212>  DNA
<213>  Cytomegalovirus

<400>  48
ttccggctca tggcgttaac caggtagaaa ctgtgtgtac agttgcgttg tgcgtaacgt       60

aaaagcaggg cg                                                           72


<210>  49
<211>  65
<212>  DNA
<213>  Cytomegalovirus

<400>  49
cggcgacgac gacgataaag aatacaaagc cgcagtgtcg tccagaggat tacgcgacca       60

gattg                                                                   65


<210>  50
<211>  68
<212>  DNA
<213>  Cytomegalovirus

<400>  50
gggcacgtcc tcgcagaagg actccaggta caccttgacg tactggtcac ctatcacctg       60

catcttgg                                                                68


<210>  51
<211>  79
<212>  DNA
<213>  Varicella zoster

<400>  51
ggtcttgccg gagctggtat taccttaaaa ctcactacca gtcatttcta tccatctgtc       60

tttgtctttc acggaggca                                                    79


<210>  52
<211>  85
<212>  DNA
<213>  Varicella zoster

<400>  52
tccatttaac gttgcatcat tttgtgttat catagaactg cgtaaacact cggcaagtaa       60

tacagataac tcgctaccgg aacgt                                             85


<210>  53
<211>  70
<212>  DNA
<213>  Adenovirus
<400>  53
cgccgccaac atgctctacc ctatacccgc caacgctacc aacgtgccca tatccatccc       60

ctcccgcaac                                                              70


<210>  54
<211>  86
<212>  DNA
<213>  Eubacterial 16s ribosomal RNA gene region I

<400>  54
tgggctacac acgtgctaca atggtcggta cagagggtcg ccaaaccgcg aggtggagct       60

aatctcacaa aaccgatcgt agtccg                                            86


<210>  55
<211>  86
<212>  DNA
<213>  Eubacterial 16s ribosomal RNA gene region II

<400>  55
ggcctaacac atgcaagtcg agcggatgaa aggagcttgc tcctggattc agcggcggac       60

gggtgagtaa tgcctaggaa tctgcc                                            86


<210>  56
<211>  71
<212>  DNA
<213>  Gram + ve bacterial specific portion of 16s ribosomal RNA gene

<400>  56
acgtcaaatc atcatgcccc cttatgacct gggctacaca cgtgctacaa tggacggtac       60

aaagggctgc a                                                            71


<210>  57
<211>  84
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  57
gcggaacgtg ggaccaatac ctgggttggg ccggctgctt cgggcagcaa ctcccccggg       60

ttgaagaaga aaatcacccc gtcg                                              84


<210>  58
<211>  74
<212>  DNA
<213>  Mycobacterium fortuitum

<400>  58
aacttttttg actgccagac acactattgg gctttgagac aacaggcccg tgcccctttt       60

ggggggtggc atcc                                                         74
<210>  59
<211>  70
<212>  DNA
<213>  Mycobacterium chelonae

<400>  59
tggttactcg cttggtgaat atgttttata aatcctgtcc accccgtgga taggtagtcg       60

gcaaaacgtc                                                              70


<210>  60
<211>  70
<212>  DNA
<213>  Toxoplasma gondii

<400>  60
cccctctgct ggcgaaaagt gaaattcatg agtatctgtg caactttggt gtattcgcag       60

attggtcgcc                                                              70


<210>  61
<211>  79
<212>  DNA
<213>  Chlamydia trachomatis

<400>  61
aatcgtatct cgggttaatg ttgcatgatg ctttatcaaa tgacaagctt agatccgttt       60

ctcatacggt tttcctcga                                                    79


<210>  62
<211>  68
<212>  DNA
<213>  Fungal specific portion of 28s ribosomal RNA gene

<400>  62
gctgggactg aggactgcga cgtaagtcaa ggatgctggc ataatggtta tatgccgccc       60

gtcttgaa                                                                68


<210>  63
<211>  77
<212>  DNA
<213>  Propionibacterium acnes

<400>  63
tggcgaacgg gtgagtaaca cgtgagtaac ctgcccttga ctttgggata acttcaggaa       60

actggggcta ataccgg                                                      77


<210>  64
<211>  68
<212>  DNA
<213>  Gram -ve bacterial specific portion of gyr B gene

<400>  64
cggcggcaag ttcgacgaca acacctacaa ggtgtccggc ggcttgcacg gtgtgggcgt       60

ctcggtgg                                                                68


<210>  65
<211>  66
<212>  DNA
<213>  Gram -ve bacterial aconitate hydratase gene

<400>  65
ccaggtcggc ggagaagccg aggcaggcga ggtccttcag ttcgtcgcgg gtcatcgggc       60

cggtgg                                                                  66


<210>  66
<211>  64
<212>  DNA
<213>  Gram -ve ribonuclease 1

<400>  66
gccgccctga ccaccttcat cagcctggcc ggccgttacc tggtgctgat gccgaacaac       60

ccgc                                                                    64


<210>  67
<211>  45
<212>  DNA
<213>  Herpes simplex virus 
<400>  67
gcaactgtgc tatccccatc acggtcatgg agtacaccga atgct                       45


<210>  68
<211>  30
<212>  DNA
<213>  Herpes simplex virus

<400>  68
cacatcacag tcgcggcagc gtcatcggcg                                        30


<210>  69
<211>  37
<212>  DNA
<213>  Herpes simplex virus
<400>  69
tccccctgga cgggtacggc cgcatgaacg gccgggg                                37


<210>  70
<211>  31
<212>  DNA
<213>  Cytomegalovirus

<400>  70
aggtagaaac tgtgtgtaca gttgcgttgt g                                      31


<210>  71
<211>  22
<212>  DNA
<213>  Cytomegalovirus

<400>  71
aatacaaagc cgcagtgtcg tc                                                22


<210>  72
<211>  26
<212>  DNA
<213>  Cytomegalovirus

<400>  72
gactccaggt acaccttgac gtactg                                            26


<210>  73
<211>  33
<212>  DNA
<213>  Varicella zoster

<400>  73
cttaaaactc actaccagtc atttctatcc atc                                    33


<210>  74
<211>  36
<212>  DNA
<213>  Varicella zoster

<400>  74
ttatcataga actgcgtaaa cactcggcaa gtaata                                 36


<210>  75
<211>  30
<212>  DNA
<213>  Adenovirus

<400>  75
ctatacccgc caacgctacc aacgtgccca                                        30


<210>  76
<211>  38
<212>  DNA
<213>  Eubacterial 16s ribosomal gene region I

<400>  76
tcggtacaga gggtcgccaa accgcgaggt ggagctaa                               38


<210>  77
<211>  38
<212>  DNA
<213>  Eubacterial 16s ribosomal gene region II

<400>  77
ggatgaaagg agcttgctcc tggattcagc ggcggacg                               38


<210>  78
<211>  24
<212>  DNA
<213>  16s ribosomal gene of gram-positive organism

<400>  78
gacctgggct acacacgtgc taca                                              24


<210>  79
<211>  42
<212>  DNA
<213>  Mycobacterium tuberculosis

<400>  79
ctgggttggg ccggctgctt cgggcagcaa ctcccccggg tt                          42


<210>  80
<211>  26
<212>  DNA
<213>  Mycobacterium fortuitum

<400>  80
ggctttgaga caacaggccc gtgccc                                            26


<210>  81
<211>  23
<212>  DNA
<213>  Mycobacterium chelonae

<400>  81
tttataaatc ctgtccaccc cgt                                               23


<210>  82
<211>  27
<212>  DNA
<213>  Toxoplasma gondii

<400>  82
aaattcatga gtatctgtgc aactttg                                           27


<210>  83
<211>  32
<212>  DNA
<213>  Chlamydia trachomatis

<400>  83
atgatgcttt atcaaatgac aagcttagat cc                                     32


<210>  84
<211>  25
<212>  DNA
<213>  28s ribosomal RNA gene of fungi

<400>  84
gtaagtcaag gatgctggca taatg                                             25


<210>  85
<211>  26
<212>  DNA
<213>  Propionibacterium acnes

<400>  85
gcttcagcgc cgtcagcgag gataac                                            26


<210>  86
<211>  30
<212>  DNA
<213>  gyrase gene of gram -ve organism

<400>  86
aacacctaca aggtgtccgg cggcttgcac                                        30


<210>  87
<211>  31
<212>  DNA
<213>  aconitate hydratase gene of gram -ve organism

<400>  87
cgaggcaggc gaggtccttc agttcgtcgc g                                      31


<210>  88
<211>  27
<212>  DNA
<213>  Ribonuclease gene of gram -ve organism

<400>  88
atcagcctgg ccggccgtta cctggtg                                           27

